Valentino Ruggieri, Irantzu Anzar, Andreu Paytuvi, Roberta Calafiore, Riccardo Aiese Cigliano, Walter Sanseverino, Amalia Barone; Exploiting the great potential of Sequence Capture data by a new tool, SUPER-CAP. DNA Res 2016 dsw050. doi: 10.1093/dnares/dsw050
Files must be raw or gzip-compressed fastq files (.fq, .fq.gz, .fastq, .fastq.gz) or bam files.
The maximum allowed size to upload is 3Gb.
Is single or paired-end data?
Genome of your species. Contact us if you do not find your genome.
You will get an email when the analysis is done.
Is quality check and adapter removal needed?

Set the allele frequencies for homozygous for the reference (first sliding bar), heterozygous (second sliding bar), or homozygous for the alternative allele (third sliding bar). Frequencies in the sliding bars are in percentage.
6-column bed format with the regions to capture, each field separated by a space/tab.
Threshold. Minimum read depth to call variants.
Threshold. Minimum genotype quality in at least one sample in order to call variants.